龚海鹏 博士

副教授

主要科研领域与方向

1. 发展计算机算法根据氨基酸序列预测蛋白质三维结构

2. 发展分子动力学模拟的新方法用于定量分析生物大分子的大尺度构象变化

代表性论文

1.     Yao Li, Tong Wang*, Juanrong Zhang, Bin Shao, Haipeng Gong*, Yusong Wang, Xinheng He, Siyuan Liu and Tie-Yan Liu.(2021)Exploring the Regulatory Function of the N-terminal Domain of SARS-CoV-2 Spike Protein Through Molecular Dynamics Simulation, Advanced Theory and Simulations, 4: 2100152.

2.     Wenze Ding and Haipeng Gong*.(2020)Predicting the real-valued inter-residue distances for proteins, Advanced Science, 7: 2001314.

3.     Juanrong Zhang and Haipeng Gong*.(2020)Frontier Expansion Sampling: A Method to Accelerate Conformational Search by Identifying Novel Seed Structures for Restart, Journal of Chemical Theory and Computation, 16(8): 4813-4821.

4.     Wenzhi Mao, Wenze Ding, Yaoguang Xing, Haipeng Gong*.(2020)AmoebaContact and GDFold as a pipeline for rapid de novo protein structure prediction. Nature Machine Intelligence, 2: 25-33.

5.     Tong Wang, Yanhua Qiao, Wenze Ding, Wenzhi Mao, Yaoqi Zhou*, Haipeng Gong*.(2019)Improved fragment sampling for ab initio protein structure prediction using deep neural networks. Nature Machine Intelligence, 1: 347-355.

6.     Wenze Ding, Wenzhi Mao, Di Shao, Wenxuan Zhang, Haipeng Gong*.(2018)DeepConPred2: an improved method for the prediction of protein residue contacts. Computational and Structural Biotechnology Journal, 16: 503-510.

7.      Juanrong Zhang, Wenzhi Mao, Yanhui Ren, Rui-Ning Sun, Nieng Yan*, Haipeng Gong*.(2018)Simulating the ion permeation and ion selection for a eukaryotic voltage-gated sodium channel NavPaS. Protein & Cell, 9(6): 580-585.

8.     Meng Ke, Yafei Yuan, Xin Jiang, Nieng Yan*, Haipeng Gong*.(2017)Molecular determinants for the thermodynamic and functional divergence of uniporter GLUT1 and proton symporter XylE. PLoS Computational Biology, 13(6): e1005603.