马剑竹 博士

国家自然科学基金海外优秀青年科学基金 （海外优青)
Health Data Science Review of the Year
2021年北京大学人工智能研究院优秀员工
2014 RECOMB Best Paper Award
2nd RNA and Protein Folding Best Paper Award
2014 3DSIG Warren DeLano Award
2012 3DSIG大会Warren DeLano Award

主要科研领域与方向

人工智能、系统生物学和生物制药

代表性论文

Large Scale Foundation Model on Single-cell Transcriptomics
Minsheng Hao, Jing Gong, Xin Zeng, Chiming Liu, Yucheng Guo, Xingyi Cheng, Taifeng Wang, Jianzhu Ma, Xuegong Zhang, Le Song

Nature Methods 2024 (corresponding author)

Few-shot learning creates predictive models of drug response that translate from high-throughput screens to individual patients
Jianzhu Ma, Samson Fong, Yunan Luo, Christopher Bakkenist, John Paul Shen, Soufiane Mourragui, Lodewyk Wessels, Marc Hafner, Roded Sharan, Jian Peng, Trey Ideker
Nature Cancer 2020

Using deep learning to model the hierarchical structure and function of a cell
Jianzhu Ma, Michael Ku Yu, Samson Fong, Keiichiro Ono, Eric Sage, Barry Demchak, Roded Sharan, Trey Ideker
Nature Methods 2018

FlowDesign: Improved Design of Antibody CDRs Through Flow Matching and Better Prior Distributions
Jun Wu, Xiangzhe Kong, Ningguan Sun, Jing Wei, Sisi Shan, Fuli Feng, Feng Wu, Jian Peng, Linqi Zhang, Yang Liu, Jianzhu Ma
Cell Systems 2025 (corresponding author)

Group retrosynthetic planning as neurosymbolic programming
Xuefeng Zhang, Haowei Lin, Muhan Zhang, Yuan Zhou, and Jianzhu Ma
Nature Communications 2024 (corresponding author)